---

name: lint description: Semantic lint of staged changes for things static analysis misses — spelling/typos, comments that no longer match the code, docstring/signature drift, stale docs & manpages, and house-style idioms (f-strings over .format()/%, logging over print). Use when asked to lint, run /lint, check staged changes for typos or spelling, find stale comments/docs, or review changes for issues ruff/pre-commit won't catch. Report-only; pass --fix for safe mechanical fixes. model: sonnet effort: medium allowed-tools: Bash(${CLAUDE_PLUGIN_ROOT}/skills/lint/scan.sh:), Bash(bash ${CLAUDE_PLUGIN_ROOT}/skills/lint/scan.sh:), Bash(git diff:), Bash(git status:), Bash(uvx codespell:*), Read, Edit

/lint — semantic linter for Pegasus WMS

/lint is a semantic reviewer, not another formatter. Pegasus already runs ruff, ruff-format, black/isort/autoflake, google-java-format and mdformat on every commit (pre-commit + the GitLab Lint job). This skill covers what those cannot: defects only a reader catches — misspellings, comments/docs that drifted from the code, and house-style idioms a formatter can't reason about.

It is driven by a candidate-gathering script, ${CLAUDE_PLUGIN_ROOT}/skills/lint/scan.sh, plus LLM-only passes over the staged diff. Default target is the git staged set (git diff --cached). Report-only by default; --fix applies only safe mechanical fixes.

Explicit paths passed to the scanner are relative to the target repo's root, not the plugin.

Run (agent path)

1. Gather mechanical candidates — run the scanner over the staged set (or pass explicit paths to scope it):

   ${CLAUDE_PLUGIN_ROOT}/skills/lint/scan.sh                                   # staged files
   ${CLAUDE_PLUGIN_ROOT}/skills/lint/scan.sh packages/pegasus-python/src/Pegasus/submitdir.py   # explicit path
   

   It prints grouped path:lineno: snippet sections (spelling, formatting, print). These are candidates — you confirm or dismiss each (see Gotchas for the false positives).

2. Read the actual staged changes for the semantic passes:

   git diff --cached
   

3. Triage + run the semantic checks below, then assemble the report (format below).

4. If invoked with --fix: apply only the mechanical findings (spelling corrections; .format()/% → f-string where the conversion is trivially safe) via Edit. Never auto-apply a semantic/judgment finding — those go in the report only.

Check catalog

Mechanical (scan.sh surfaces, you confirm)

• Spelling — comments, docstrings, identifiers, user-facing strings, and .rst/.md docs. (codespell; falls back to your reading of the diff if codespell is unavailable.)
• .format() / % → f-strings — the repo is overwhelmingly f-strings (1000+ vs ~110).
• print() in library code → logging — src/Pegasus/cli/ is the sanctioned exception and is excluded by the scanner.

Semantic (LLM-only — read the diff; no script can do these)

• Comment ⇄ code drift — comment/docstring claims X but the code does Y; comment references a renamed variable/param; stale comment left behind after a refactor.
• Docstring ⇄ signature drift — Google-style :param:/:type:/return don't match the actual args or return; a documented raises that can't happen, or a raised exception that isn't documented.
• Doc staleness — changed CLI flags/options, class signatures, or behavior not reflected in doc/sphinx/ (autodoc + sphinx_click manpages), the package README.md, or examples. Flag example commands/snippets that would no longer run.
• Misleading names — get_*/is_* that mutates; a name that says one unit but the code uses another.
• Error/log quality — message text that contradicts the actual failure; wrong log level (logging.error on a normal path); bare except: pass that swallows.
• Copy-paste residue — a duplicated block where one variable wasn't updated.
• Magic numbers/strings — unexplained literals a named constant or comment would clarify.
• Terminology consistency — the same concept named differently across code and docs.
• Stale TODO/FIXME — markers referencing work that's already done or removed.
• Hardcoded paths/URLs/secrets — absolute paths, hostnames, or credentials that belong in config.

Report format

Group by check. One line per finding: file:line — issue — suggested fix. Order high→low confidence. State plainly when a section had no findings. End with a one-line summary count, e.g. Summary: 3 spelling, 1 comment-drift, 0 doc-staleness.

Gotchas

• codespell isn't installed directly — the scanner runs it via uvx codespell (~1.5s startup). If neither codespell, the codespell_lib module, nor uvx is present, the spelling section prints a degrade notice and you cover spelling by reading the diff.
• codespell exits non-zero when it finds typos — handled in the script (keys off output, not exit status); don't "fix" that with set -e.
• %/.format() false positives — many % hits are regex, SQL LIKE, or strftime patterns, not string formatting. The scanner already drops logging-format lines (log.info("%s", x) is correct lazy logging); confirm the rest before flagging.
• print() under cli/ is fine — those are user-facing CLI tools and are excluded.
• --fix is mechanical-only — applying a semantic finding without human judgment is how you introduce bugs. Report them; don't edit them.
• Empty staged set — scan.sh with nothing staged exits cleanly with a hint; stage files (git add) or pass explicit paths.