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Spark Python Data Source
Data & AI
Build custom data sources for Apache Spark using the PySpark DataSource API for batch and streaming reads and writes.
Distress Screening (K6/K10)
Data & AI
Screen for psychological distress using the K6 and K10 scales, with administration and scoring guidance.
Bio Survival Analysis with lifelines
Data & AI
Analyzes time-to-event data using Kaplan-Meier, log-rank tests, and Cox regression with lifelines. Builds survival models from clinical and omics features.
Bio Annotation
Data & AI
Functional annotation and taxonomy inference from sequence homology.
Excel MCP Skill
Data & AI
MCP tools for reading, writing, and formatting Excel files, featuring two modes: workbook (for open Excel) and path (for closed files).
Advanced Evaluation
Data & AI
Production-grade techniques for evaluating LLM outputs using LLMs as judges, including direct scoring and pairwise comparison with bias mitigation.
NK Cell Therapy Agent
Data & AI
AI-driven design and optimization of natural killer cell therapies for cancer immunotherapy. Covers CAR-NK engineering, memory-like NK generation, and KIR/HLA matching optimization for allogeneic treatment.
Generate Publication-Ready TDA Figures
Data & AI
Generates matplotlib figures for topological data analysis (TDA) following the trajectory_tda/viz codebase conventions. Uses style constants and pre-defined figure templates.
Paper Reference Assistant (CLI)
Data & AI
CLI assistant to manage and query a local database of academic papers using the `papi` command. Supports listing, searching (exact text, BM25, hybrid), showing summaries/equations, and adding papers via arXiv ID or PDF. Use before MCP RAG tools for fast, low-cost lookups.
ML Pipeline Builder
Data & AI
Build production machine learning pipelines from raw data to deployed model APIs, covering ingestion, validation, feature engineering, training, evaluation, registry, serving, and monitoring.
Gemini CLI - AI Assistant
Data & AI
Gemini CLI for one-shot Q&A and summaries. Access Google's Gemini models directly from the terminal for quick questions and content generation.
Foundation Settlement Calculator
Data & AI
Calculates foundation settlements including immediate elastic settlement, primary consolidation, and secondary compression using established geotechnical methods.